Rises and Begins both feature Batman saying something cryptic but referential to a previous even to reveal his identity. After which the other party says his real name and Batman flies off.
The end of Batman Begins is similar to the scene in The Dark Knight where Batman glides into the Pruant building. He talks to Gordon on a rooftop, then jumps off and activates his cape, flying into the camera.
All 3 movies feature a chase that involves Batman and the police to some extent, and they all eventually lead to the same tunnels underground.
Ras and Talia both die in similar fashions: Having their vehicle fall several feet and crash. The same music plays for both scenes, which also plays when Batman tosses the Joker off of the building in TDK.