After being spurred by the actual release of the movie to finish my list of appearances, here's what I've got... I've been working on this list off & on for over 15 years, and this list is combined from about 8 different lists I dug up (one off of paper that was so old that it was falling apart)...
I've tried to verify most of it based on either my own collection, some one else's, or websites that I would hope are correct (comicbookdb, some fan sites, some sale sites, etc)... Stupid me didn't save the links for half the sites so when it came time to combine all my various lists, I had a hard time verifying some of it...
Keep in mind, these issues came out of my inventory software and I try to mark all the Ghost Rider (all of them), Vengeance, Blade, Morbius, etc comics with a "Special" flag. I've tried to eliminate everything but the GR apperances from the list, but may have missed some... Plus, I make no distinction between any of the Ghost Riders in terms of this list. Sorry for the ugly formatting, but I couldn't put it in exactly as I had it since it would have been too many characters... That's also why I couldn't include my comments...
2099 A.D. -- v.1, #1
2099 A.D. Genesis -- v.1, #1
2099: Manifest Destiny -- v.1, #1
Adventures of the Thing -- v.1, #2
The Amazing Spider-Man -- v.1, #274
The Amazing Spider-Man: Hit & Run -- v.1, #3
The Avengers -- v.1, #115, #116, #117, #118, #142, #143, #151, #214
The Avengers -- v.3, #27 (reprints Avengers v.1 #150 & #151)
Ballistic/Wolverine -- v.1, #1
Battlezones: Dream Team 2 -- v.1, #1
Beavis & Butt-Head -- v.1, #7 (B&B read a Ghost Rider comic)
Before The FF: The Storms -- v.1, #3
Blade -- v.1, #1
Blade -- v.2, #1, #2, #3
Blade -- v.3, #1 thru #6
Blade: Sins of the Father -- v.1, #1
Blade: The Vampire Hunter -- v.1, #1 thru #10
Blaze -- v.1, #1 thru #12
Blaze: Legacy of Blood -- v.1, #1 thru #4
Captain America -- v.1, #191
The Champions -- v.1, #1 thru #17
Cloak and Dagger -- v.3, #17
Cloak and Dagger -- v.3, #18
Cloak and Dagger -- v.3, #19
Code of Honor -- v.1, #4
Comic Book Artist Magazine -- v.1, #13
Comics Scene Yearbook -- v.1, #1
Conan The Barbarian -- v.1, #49
Cyblade/Ghost Rider -- v.1, #1
Damage Control -- v.3, #4
Daredevil -- v.1, #127, #138, #295, #372
Darkhawk -- v.1, #21 thru #25
Darkhold: Pages From The Book of Sins -- v.1, #1 Thru #16
DC Vs. Marvel/Marvel Vs. DC -- v.1, #1 thru #4
Death 3 -- v.1, #2
Deathlok -- v.2, #9
Deathlok -- v.2, #10
The Defenders -- v.1, #96, #145, #146, #GS2
Doctor Strange, Sorcerer Supreme -- v.1, #28
Doctor Strange, Sorcerer Supreme -- v.1, #50
Doctor Strange, Sorcerer Supreme -- v.1, #60 thru #66
Doctor Strange/Ghost Rider Special -- v.1, #1
Double Edge: Alpha -- v.1, #1
Double Edge: Omega -- v.1, #1
Dream Team -- v.1, #1
Essential Marvel Team-Up -- v.1, #TP1
Exiles -- v.1, #55 thru #57
Exiles -- v.1, #TP9
Fantastic Four -- v.1, #236
Fantastic Four -- v.1, #347 thru #349
Fantastic Four -- v.1, #374
Fantastic Four -- v.1, #375
Fantastic Four Roast -- v.1, #1
Ghost Rider -- v.1, #1 thru #81
Ghost Rider -- v.2, #1 thru #93, #A1, #A2, #(-1)
Ghost Rider -- v.3, #1 thru #6 and #(1/2)
Ghost Rider -- v.4, #1 thru #8
Ghost Rider & The Midnight Sons Magazine -- v.1, #1
Ghost Rider 2099 -- v.1, #1 thru #25
Ghost Rider Finale -- v.1, #94
The Ghost Rider -- v.1, #1 thru #7
Ghost Rider/Ballistic -- v.1, #1
Ghost Rider/Blaze: Spirits of Vengeance -- v.1, #1 thru #23
Ghost Rider/Captain America: Fear -- v.1, #PF1
Ghost Rider: Crossroads -- v.1, #1
Ghost Rider: Highway To Hell -- v.1, #1
Ghost Rider: The Road To Damnation -- v.1, #1 thru #6
Ghost Rider: Trail of Tears -- v.1, #1
Ghost Rider; Wolverine; Punisher: Dark Design -- v.1, #1
Ghost Rider; Wolverine; Punisher: Hearts of Darkness -- v.1, #1
Giant-Size Hulk -- v.1, #1
Godzilla -- v.1, #3
Guardians of The Galaxy -- v.1, #13, #14, #15, #34, #35, #36, #37, #A2
Gun Runner -- v.1, #1, #2
The Human Fly -- v.1, #2
Iceman -- v.1, #3
The Incredible Hulk -- v.1, #209
Iron Man -- v.1, #67, #A4, #KS4
Marc Spector: Moon Knight -- v.1, #25
Marvel Age -- v.1, #87
Marvel Collector's Edition -- v.1, #1
Marvel Comics Index -- v.1, #9A
Marvel Comics Presents -- v.1, #64 thru #71, #90 thru End
Marvel Fanfare -- v.1, #10
Marvel Fanfare -- v.2, #3
The Marvel Fumetti Book -- v.1, #1
Marvel Graphic Novel -- v.1, #1
Marvel Holiday Special -- v.1, #1
Marvel Holiday Special -- v.1, #2
Marvel Holiday Special -- v.1, #3
Marvel MangaVerse: Ghost Riders -- v.1, #1
The Marvel Masterpieces Collection -- v.1, #2
Marvel Milestones: Ghost Rider, Black Widow & Iceman -- v.1, #1
Marvel Milestones: Legion of Monsters, Spider-Man & Brother Voodoo -- v.1, #1
Marvel Premiere -- v.1, #28
Marvel Preview -- v.1, #8
Marvel Spotlight -- v.1, #5 thru #12, #22
Marvel Spotlight: Ghost Rider -- v.1, #1
Marvel Super-Heroes -- v.2, #11
Marvel Tails -- v.1, #1
Marvel Tales -- v.1, #254 thru #256
Marvel Team-Up -- v.1, #15, #58, #91
Marvel Treasury Edition -- v.1, #13
Marvel Treasury Edition -- v.1, #18?
Marvel Two-In-One -- v.1, #8, #80
Marvel Universe Millennial Visions -- v.1, #1
Marvels -- v.1, #4
Mega Morphs -- v.1, #1 thru #4, TPB
Midnight Sons Unlimited -- v.1, #1 thru #9
Morbius: The Living Vampire -- v.1, #1, #12, #15, #16, #17, #29
Mythos: Ghost Rider -- v.1, #1
The New Avengers: Letters Home -- v.1, #1
Night Rider -- v.1, #1 thru #6
Nightstalkers -- v.1, #1, #7, #10, #15
Official Handbook of the Marvel Universe : Marvel Knights 2005 -- v.1, #1
The Official Handbook of the Marvel Universe Master Edition -- v.1, #3
Official Handbook of The Marvel Universe -- v.1, #13
Official Handbook of The Marvel Universe -- v.2, #2
Official Handbook of The Marvel Universe -- v.2, #13
The Original Ghost Rider Rides Again -- v.1, #1 thru #7
The Original Ghost Rider -- v.1, #1 thru #23
Over The Edge -- v.1, #4, #9
Paradise X -- v.1, #9, #10
Punisher War Journal -- v.1, #29, #30, #57, #58
Quasar -- v.1, #19 thru #25 (he's in 1 part of this story)
Shadow Riders -- v.1, #1 thru #4 (in a couple parts)
Shogun Warriors -- v.1, #7
Silver Surfer -- v.3, #14, #A6
Slapstick -- v.1, #4
Sleepwalker -- v.1, #11, #S1 (Holiday Special)
The Spectacular Spider-Man -- v.1, #17, #18
The Spectacular Spider-Man -- v.1, #207, #208 (Siege of Darkness Crossover)
Speed Demon -- v.1, #1
Spider-Man -- v.1, #6, #7
Spider-Man -- v.1, #18, #19, #20, #21, #22, #23 (Sinister Six)
Spider-Man -- v.1, #93
Spoof Comics Presents -- v.1, #13
Super-Villain Team-Up -- v.1, #14
Supernaturals -- v.1, #1 thru #4
Supernaturals Tour Book -- v.1, #1
Team America -- v.1, #11
Terror Inc. -- v.1, #13
Thor -- v.1, #229, #429, #430
Thunderbolts -- v.1, #57
Tomb of Dracula -- v.1, #26, #29
Venom: Nights Of Vengeance -- v.1, #1 thru #4
Venom: Sign of the Boss -- v.1, #1
Venom: Sign of the Boss -- v.1, #2
Warheads: Black Dawn -- v.1, #1
Warheads: Black Dawn -- v.1, #2
Warlock And The Infinity Watch -- v.1, #20
Weapon Zero/Silver Surfer -- v.1, #1
Web of Spider-Man -- v.1, #95, #96
Werewolf By Night -- v.2, #6
West Coast Avengers -- v.2, #8, #9, #19
What if? -- v.1, #17, #28, #34
What if? -- v.2, #20, #34, #45, #78, #95
What The-?! -- v.1, #11, #13, #19, #21, #25
Wolverine -- v.2, #89, #148
Wolverine/Witchblade -- v.1, #1
X-Force/Champions '98 -- v.1, #1
X-Men (1991) -- v.1, #8, #9
Here's some additional ones I ran into off a couple of my lists... I have NO idea where they came from... The Wolverine is a possible, but I can't imagine Ghostie in a swimsuit.... Anyone say "yea" or "nay" on them for sure??
Marvel Swimsuit #1 & #2
Wolverine Annual 2000