Actually that wasn't even a fight. Cyclops fell down a hole, Wolverine caught him, then when no-one was looking he dropped him.
Besides that, Wolverine beat the crap out of him in a fist fight but Cyclops blasted him through a wall and just when Wolverine popped out the claws and lunged(SP?) at him, Xavier froze both their minds and put them in time out.
Cyclops did come back after the drop though by the way. Blasted Wolverine unconscious (but Wolverine felt he deserved it and let him).
In Astonishing, once again Cyclops just blasts Wolverine but the rest of the fight was off screen but I'll tell you this; Cyclops didn't have a scratch on him after.
As for other moments, in Ultimate X-men Marvel Girl slammed Wolverine unconscious into a wall.
Wolverine killed all the X-men (holograms) in a Danger Room session (quite well done too).
Also in Ultimate, Gambit beat Wolverine in their first fight by grabbing one of his claws and threatening to blow him up from the inside out...He later put his broken staff in his mouth (do. not. say. a word.) and blew his mouth off...Later Wolverine beat the crap out of him (Gambit did not want to fight him though. He was now a good guy.)
In ultimate, Colossus and Wolverine fought mostly offscreen in danger room sessions but I remember Collossus walking out with his body over his shoulder.
In Astonishing, Wolverine and Beast beat the crap out of each other to a draw (Emma Frost intervened, made them bow, and sent them to time out).
These are all the moments I can think of off the top of my head and even so they're just Wolverine moments. There are so many of these.