No one likes this:
Braniac comes to Earth sensing a Kryptonian distress signal from the Fortress which was ment as a guiding light for Jor El and Co. but sense Krypton was destroyed earlier than predicted it never fully happened, Brainiac sends scouts to earth and they began to attach onto people, ala Borg implants and such the knowledge and culture right out of them, mean while Clark and Lois are in a Middle eastern country called Syran covering the discovery of the oldest ruins to be found on earth they tell an epic story about God VS Evil the Apocalypse VS a Genesis, Brainiac's probes are sweaping the world and attack the site and start trying to get people, Supes jumps into action and quickly takes them out he flies around the world taking out all of the droids. Brainiac scans the history of earth and finds Lex Luthor, the one person who can almost defeat superman. Luthor with brainiac's large computing power strikes it rich over night in the Stockmarket and creates LexCorp, vowing that he has turn his ways and that he wants to protect the Earth, with Brainiac's help he creates Metallo, designed to be Superman's replacement. Metallo armed with brainiac's knowledge of Kryptonian Biology hunts down Supes, leading to a huge battle between them, Brainiac's minions show up and start zombifing more people which causes Supes to turn away and try and help, Metallo detects Kryptonian DNA in Jason and goes and finds him, kidnaps him and Broadcasts himself killing Jason over the entire city while jason cries and screams for his "Daddy", Supes filled with rage jets to Metallo and and just starts beating the hell out of him, until he gets to the Kryptonite hidden in his chest Supes gets really weak but as he looks at Jason's body he finds the strength to tear Metallo basicly in half. He gets Jason's Body and flies to the fortress and lays him on a plaque and draps the El Family crest over him. Brainiac begins a World Broadcast telling the planet have hours to live, and that one city will be choosen to survive. Supes flies back grabs Metallo's body minus Kryptonite and jets to Luthor's place, in a rage he demands to know where Brainiac is, Luthor denies him and simply looks up, Supes jets to space and sees Brainiac Mother Satellite orbiting, covered in Kryptonite Supes X-rays through Brainiac's ship and sees its powersupply, a huge Black hole, Supes jets off into space and flies right into the sun its takes a minute but he emerges through the otherside glowing blue and red he slams against the mothership and pushes it earth as it slams down into the middle of the Middle eastern desert there is a huge explosion. The ship basicly disentegrated and the Zombie-Borg implants begin to disovle and restore the normal order of the people. There is no sign of Superman, but it appears there was a huge rift in the fabric of Space for a few mili-seconds. Lois, who goes to the fortress of Solitude finds nothing, just a blooded S scroud and a picture of a Crudely drawn heart, it appears there is a hole in the ceiling and she bursts into tears.
After this we have a 3rd movie were Superman ends up on Apokolips as a result of the colasping Black Hole, he has forgotten who he is and you know the rest, just like STAS. Hinted at in the 2nd movie with the Temple scene.
After that we can have Zod return as the result of space rift opening up the phantom Zone, he gets the people of Syran to believe he is the prophet of fire and they worship him as a god. Or we could have Bizzaro show up and have him be the one who kidnaped Jason's regenerated body.